Өсімдіктердегі кремний кристалдары

Rigid structures found in some plants

Phytoliths (from Greek, "plant stone") are rigid, microscopic structures made of silica, found in some plant tissues and persisting after the decay of the plant. These plants take up silica from the soil, whereupon it is deposited within different intracellular and extracellular structures of the plant. Phytoliths come in varying shapes and sizes. Although some use "phytolith" to refer to all mineral secretions by plants, it more commonly refers to siliceous plant remains. In contrast, mineralized calcium secretions in cacti are composed of calcium oxalates. The silica is absorbed in the form of monosilicic acid (Si(OH)4), and is carried by the plant's vascular system to the cell walls, cell lumen, and intercellular spaces. Depending on the plant taxa and soil condition, absorbed silica can range from 0.1% to 10% of the plant's total dry weight. When deposited, the silica replicates the structure of the cells, providing structural support to the plant. Phytoliths strengthen the plant against abiotic stressors such as salt runoff, metal toxicity, and extreme temperatures. Phytoliths can also protect the plant against biotic threats such as insects and fungal diseases.

There is still debate in the scientific community as to why plants form phytoliths, and whether silica should be considered an essential nutrient for plants. Phytoliths also appear to provide physiologic benefits. Experimental studies have shown that the silicon dioxide in phytoliths may help to alleviate the damaging effects of toxic heavy metals, such as aluminum. Finally, calcium oxalates serve as a reserve of carbon dioxide in Alarm photosynthesis. Cacti use these as a reserve for photosynthesis during the day when they close their pores to avoid water loss; baobabs use this property to make their trunks more flame resistant.

According to Dolores Piperno, an expert in the field of phytolith analysis, there have been four important stages of phytolith research throughout history. Discovery and exploratory stage (1835–1895): The first report on phytoliths was published by a German botanist named de in 1835. During this time another German scientist named Christian Gottfried Ehrenberg was one of the leaders in the field of phytolith analysis. He developed the first classification system for phytoliths, and analyzed soil samples that were sent to him from all around the world. Most notably, Ehrenberg recorded phytoliths in samples he received from the famous naturalist, Charles Darwin, who had collected the dust from the sails of his ship, HMS Beagle, off the coast of the Cape Verde Islands. Botanical phase of research (1895–1936): Phytolith structures in plants gained wide recognition and attention throughout Europe. Research on production, taxonomy and morphology exploded. Detailed notes and drawings on plant families that produce silica structures and morphology within families were published. Period of ecological research (1955–1975): First applications of phytolith analysis to paleoecological work, mostly in Australia, the United States, the United Kingdom, and Russia. Classification systems for differentiation within plant families became popular. Modern period of archaeological and paleoenvironmental research (1978–present): Archaeobotanists working in the Americas first consider and analyze phytolith assemblages in order to track prehistoric plant use and domestication. Also for the first time, phytolith data from pottery are used to track history of clay procurement and pottery manufacture. Around the same time, phytolith data are also used as a means of vegetation reconstruction among paleoecologists. A much larger reference collection on phytolith morphology within varying plant families is assembled.

[[File:Phytoliths types II. webp|thumb|upright=2| center|Types of phytoliths found on broad leaved trees in China

Silica is not considered an essential nutrient for plants such as nitrogen or phosphorus. However, silica aided phytoliths can help a plant be more resilient against biotic and abiotic stressors. Silica is bioactive, meaning it is able to change the expression of certain plant genes to jumpstart a defensive response against these stressors. In terms of fungal infections, the deposition of silica has been shown to create a physical barrier between invading fungi and the plant. In 2009, researchers at the Rock Springs Agricultural Experiment Station at The Pennsylvania State University investigated the effects of pathogenic viruses on phytolith production in Cucurbita pepo var. Texana. The plants that were affected by either mosaic virus (carried by aphids) or bacterial wilt disease (carried by cucumber beetles) were infected on their own to replicate natural conditions and all plants were grouped into three categories: healthy plants sprayed to prevent insect herbivory, plants infected with mosaic disease, and plants infected with bacterial wilt disease. Phytoliths may be extracted from residue on many sources: dental calculus (buildup on teeth); food preparation tools like rocks, grinders, and scrapers; cooking or storage containers; ritual offerings; and garden areas.

Cultural contexts: The most important consideration when designing a sampling strategy for a cultural context is to fit the sampling design to the research objectives. For example, if the objective of the study is to identify activity areas, it may be ideal to sample using a grid system. If the objective is to identify foodstuffs, it may be more beneficial to focus on areas where food processing and consumption took place. It is always beneficial to sample ubiquitously throughout the site, because it is always possible to select a smaller portion of the samples for analysis from a larger collection. Samples should be collected and labeled in individual plastic bags. It is not necessary to freeze the samples, or treat them in any special way because silica is not subject to decay by microorganisms. Natural contexts: Sampling a natural context, typically for the purpose of environmental reconstruction, should be done in a context that is free of disturbances. Human activity can alter the makeup of samples of local vegetation, so sites with evidence of human occupation should be avoided. Bottom deposits of lakes are usually a good context for phytolith samples, because wind often will carry phytoliths from the topsoil and deposit them on water, where they will sink to the bottom, very similar to pollen. It is also possible and desirable to take vertical samples of phytolith data, as it can be a good indicator of changing frequencies of taxa over time. One of the most effective methods of phytolith isolation is heavy liquid flotation. Over time, different liquids have been utilized as technology changes, each still carrying different advantages and disadvantages to the separation process. Current liquids used include zinc bromide, hydrochloric acid, or sodium polytungstate which are added to the sample. After flotation occurs, the separated phytoliths and liquid are moved to another container where water is added. This lowers the solution's density, causing the phytoliths to sink to the bottom of the container. The phytoliths are removed and rinsed several times to ensure all of the flotation solvent has been removed and they are placed in storage. Phytoliths can either be stored in a dry setting or in ethanol to prevent abrasion. To date, phytolith analyses have also been popular for studies of rice. Because the morphology of rice phytoliths has been significantly documented, studies concerning the domestication of rice, as well as crop processing models using phytolith analyses, are insightful. In one study, phytolith analysis was used to complement macro remains sampling in order to infer concentrations of plant parts and predict crop processing stages. Phytolith analysis has been useful in identifying early agriculture in South East Asia during the Early Holocene.

Jigsaw puzzle shaped phytoliths observed from sites in Greece but not from Israel may relate to climatic difference, possibly relating to irrigation performed for legume plant management. Cucurbita (squash and gourd) phytolith data from early Holocene sites in Ecuador indicate that the plant food production occurred across lowland South America independent from Mesoamerica.

Multiplicity: different parts of a single plant may produce different phytoliths. Redundancy: different plants can produce the same kind of phytolith. Some plants produce large numbers of phytoliths while others produce only few. It is suggested that using phytolith data from food residues (on ceramics, usually) can decrease the bias from both of these problems, because phytolith analysis is more likely to represent crop products and identification of phytoliths can be made with more confidence. Also, food residues do not usually accumulate extraneous deposits. In other words, the samples are more likely to represent a primary context. and have been reported from the Late Devonian onwards. In addition to reconstructing human plant interactions since the Pleistocene, phytoliths can be used to identify palaeoenvironments and to track vegetational change.). Occasionally, paleontologists find and identify phytoliths associated with extinct plant eating animals (i. e. herbivores). Findings such as these reveal useful information about the diet of these extinct animals, and also shed light on the evolutionary history of many different types of plants. Paleontologists in India have recently identified grass phytoliths in dinosaur dung (coprolites), strongly suggesting that the evolution of grasses began earlier than previously thought. Phytolith records in the context of the global silica cycle, along with CO2 concentrations and other paleoclimatological records, can help constrain estimates of certain long term terrestrial, biogeochemical cycles and interrelated climate changes. Light intensity (e. g., open versus closed canopies) can affect cell morphology, especially cell length and area, which can be measured from phytolith fossils. These can be useful for tracing fluctuations in the ancient light regime and canopy cover. Freshwater oases and related landscape changes that could have affected plant human interactions were reconstructed through synthesizing phytolith, pollen, and paleoenvironmental data in the well known early hominin site of Olduvai Gorge in Tanzania. Comparisons between paleorecords of phytolith remains and modern reference remains in the same region can aid reconstructing how plant composition and related environments changed over time. Japanese and Korean archaeologists refer to grass and crop plant phytoliths as "plant opal" in archaeological literature.

For extended examples of phytolith taxonomy, see the University of Sheffield's comprehensive Phytolith Interpretation page.

Research, particularly since 2005 has shown that carbon in phytoliths can be resistant to decomposition for millennia and can accumulate in soils. While researchers had previously known that phytoliths could persist in some soils for thousands of years and that there was carbon occluded within phytoliths that could be used for radiocarbon dating, research into the capacity of phytoliths as a method of storing carbon in soils was pioneered by Parr and Sullivan who suggested that there was a real opportunity to sequester carbon securely in soils for the long term, in the form of carbon inclusions in durable silica phytoliths. During the mineralization process which creates the phytolith, many different nutrients are absorbed from the soil including carbon which forms Phytolith Occluded Carbon (PhytOC). Phytoliths are able to hold PhytOC in the soil for thousands of years, much longer than other organic methods. While this yields phytoliths as an important area of study regarding carbon sequestration, not all plant species produce analogous results. For example, phytoliths derived from oats can hold 5.0% to 5.8% carbon while sugarcane phytoliths can yield 3.88% to 19.26% carbon. Different species and subspecies hold different carbon storage potential within the silica rather than within the plant itself. While carbon sequestration is a potentially important way to limit atmospheric greenhouse gas concentrations in the long term, the use of phytoliths to achieve this must be balanced against other uses that might be made of the same biomass carbon (or land for producing biomass) to reduce GHG emissions by other means including, for example, the production of bioenergy to offset fossil fuel emissions. If enhanced phytolith production results in a reduced availability of biomass for other GHG mitigation strategies, its effectiveness for lowering net GHG emissions may be reduced or negated.